1.   國家自然科學基金：鯉春病毒血癥病毒誘導氧化應激的發生及其分子機理，主持。

2.  華中農業大學自主科技創新基金：團頭魴、鱖魚、黃顙魚主要疾病的流行病學調查和綜合防治技術研究，主持。

3．教育部新教師基金：錦鯉皰疹病毒編碼的腫瘤壞死因子受體類似物功能研究，主持。

4．華中農業大學博士啟動基金：鯉皰疹病毒2的分子流行病學研究，主持。

5．病毒學國家重點實驗室開放課題：我國Reston埃博拉病毒分子流行病學研究，主持。

（二）發表的主要期刊論文：

1． Lijuan Li, Yangzhi Luo, Zexia Gao, JianHuang, XianghaiZheng, Huihui Nie, Junmei Zhang, Li Lin, Junfa Yuan*. Molecular characterisation and prevalence of a new genotype of Cyprinid herpesvirus 2 in mainland China.Journal of Canadian Microbiology.2015 Mar61: 1-7

2． Yuan J, Yang Y, Nie H, Li L, Gu W, Lin L, Zou M, Liu X, Wang M, Gu Z. Transcriptome analysis of epithelioma papulosum cyprini cells after SVCV infection.BMC Genomics. 2014 Oct 25;15:935.

3． Gu WG,Liu BN,Yuan JF*.Virtual-screening targeting Human Immunodeficiency Virus type 1 integrase-lens epithelium-derived growth factor/p75 interaction for drug development.Journal of Drug Targeting. 2014 Sep 18:1-6.（共同通訊作者）

4． Gu WG,Zhang X,Yuan JF*. Anti-HIV drug development through computational methods.AAPS Journal. 2014 Jul;16(4):674-80.(IF=3.905)

5． Yang Y, Huang J, Li LJ, Lin L, Zhai YH, Chen XX, Liu XQ, Wu ZX,Yuan JF*.Up-regulation of nuclear factor E2 - Related factor 2 upon SVCV infection.Fish and Shellfish Immunology.2014,40(1):245-252.（共同通訊作者）

6． Luo YZ, Lin L, Liu Y, Wu ZX, Gu ZM, Li LJ*,Yuan JF*. Haematopoietic necrosis of cultured Prussian carp,Carassius gibelio(Bloch), associated withCyprinid herpesvirus2.Journal of Fish Diseases.2013,36:1035-39. （共同通訊作者）

7． Junfa Yuan, Nian Su, Min Wang, Ping Xie, Zhengli Shi, Lijuan Li. Down-regulation of Heme Oxygenase-1 by SVCV Infection.Fish and Shellfish Immunology.2012, 32(2): 302-306 (IF=3.05).

8． Junfa Yuan,Glenn Marsh,Dimple Khetawat,Christopher C. Broder,Lin-Fa Wang,Zhengli Shi.Mutations in the G-H loop region of ephrin-B2 can enhance Nipah virus binding and infection.J Gen Virol. 2011, 92(9):2142-2152.

9． Junfa Yuan, Chung-Chau Hon, Yan Li, Dingming Wang, Gelin Xu, Huajun Zhang, Peng Zhou, Leo L. M. Poon, Tommy Tsan-Yuk Lam, Frederick Chi-Ching Leung and Zhengli Shi. Intra-species Diversity of SARS-Like Coronaviruses (CoVs) in Rhinolophus sinicus and Its Implications on the Origin of SARS-CoVs in human.J Gen Virol. 2010, 91(Pt 4):1058-62（共同第一)

10． Yulin Liu,Junfa Yuan, Weimin Wang, Xiaoxuan Chen, Rong Tang, Min Wang, Lijuan Li.Identification of envelope protein ORF10 of channel catfish herpesvirus.Journal of Canadian Microbiology.2012, 58: 271-277. (共同第一)

11．Junfa Yuan, Yan Li, Huajun Zhang, Peng Zhou, Zhenhua Ke, Yunzhi Zhang, Zhengli Shi. Indirect Enzyme-Linked Immunosorbent Assay Based on the Nucleocapsid Protein of SARS-like Coronaviruses.Virologica Sinica 2009 24(2):146-151.

12．   楊毅，李莉娟，陳孝煊，袁軍法*.錦鯉皰疹病毒ORF134基因的克隆與表達.華中農業大學學報. 2013,32(4):100-1105.

13．  李莉娟，羅楊志，劉學芹，顧澤茂，袁軍法*.鯉皰疹病毒2型在我國金魚中的檢出.華中農業大學學報. 2013,32(1):7-11.

14． 袁軍法,李莉娟,谷萬港,祝?琳,石正麗.對蝦白斑綜合征病毒VP28免疫后克氏原螯蝦血清酶活性及中和活性.武漢大學學報(理學版), 2005, 51 (S2): 253～258.

15． 袁軍法,張化俊,張建紅,陳孝煊,石正麗. Taura綜合征病毒主要結構蛋白的表達與純化.武漢大學學報(理學版), 2004, 50(6): 731-735.